Publications of the Institute of Medical Physics and Biophysics in 2009

Authors:Becker T., Bhushan S., Jarasch A., Armache J.P., Funes S., Jossinet F., Gumbart J., Mielke T., Berninghausen O., Schulten K., Westhof E., Gilmore R., Mandon E.C. & Beckmann R.

Title:Structure of monomeric yeast and mammalian Sec61 complexes interacting with the translating ribosome

Journal:Science Year:2009; Volume:326Issue:(5958):Pages:1369-73.

Authors:Berndt U., Oellerer S., Zhang Y., Johnson A.E. & Rospert S.

Title:A signal-anchor sequence stimulates signal recognition particle binding to ribosomes from inside the exit tunnel

Journal:P Natl Acad Sci USA Year:2009; Volume:106Issue:(5):Pages:1398-403.

Authors:de Breyne S., Yu Y., Unbehaun A., Pestova T.V. & Hellen C.U.T.

Title:Direct functional interaction of initiation factor eIF4G with type 1 internal ribosomal entry sites

Journal:P Natl Acad Sci USA Year:2009; Volume:106Issue:(23):Pages:9197-202.

Authors:Feuerstein S.E., Pulvermüller A., Hartmann R., Granzin J., Stoldt M., Henklein P., Ernst O.P., Heck M., Willbold D., and Koenig B.W.

Title:Helix formation in arrestin accompanies recognition of photoactivated rhodopsin

Journal:Biochemistry US Year:2009; Volume:48Issue:(45):Pages:10733-42.

Authors:Harmeier A., Wozny C., Rost B.R., Munter L.M., Hua H., Georgiev O., Beyermann M., Hildebrand P.W., Weise C., Schaffner W., Schmitz D. & Multhaup G.

Title:Role of amyloid-beta glycine 33 in oligomerization, toxicity, and neuronal plasticity

Journal:J Neurosci Year:2009; Volume:29Issue:(23):Pages:7582-90.

Authors:Hildebrand P.W., Goede A., Bauer R.A., Gruening B., Ismer J., Michalsky E. & Preissner R.

Title:SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins

Journal:Nucleic Acids Res Year:2009; Volume:37Issue:(Web Server Issue):Pages:W571-4.

Authors:Hildebrand P.W., Scheerer P., Park J.H., Choe H.W., Piechnick R., Ernst O.P., Hofmann K.P. & Heck M.

Title:A ligand channel through the G protein coupled receptor opsin

Journal:PLoS ONE Year:2009; Volume:4Issue:(2):Pages:e4382.

Authors:Hofmann KP, Scheerer P, Hildebrand PW, Choe HW, Park JH, Heck M, Ernst OP

Title:A G protein-coupled receptor at work: the rhodopsin model

Journal:Trends Biochem Sci Year:2009; Volume:34Issue:(11):Pages:540-52.

Authors:Mroginski M.A., von Stetten D., Escobar F.V., Strauss H.M., Kaminski S., Scheerer P., Günther M., Murgida D.H., Schmieder P., Bongards C., Gärtner W., Mailliet J., Hughes J., Essen L.O. & Hildebrandt P

Title:Chromophore structure of cyanobacterial phytochrome Cph1 in the Pr state: reconciling structural and spectroscopic data by QM/MM calculations

Journal:Biophys J Year:2009; Volume:96Issue:(10):Pages:4153-63.

Authors:Munro J.B., Sanbonmatsu K.Y., Spahn C.M.T. & Blanchard S.C.

Title:Navigating the ribosome's metastable energy landscape

Journal:Trends Biochem Sci Year:2009; Volume:34Issue:(8):Pages:390-400.

Authors:Przybylski P., Pyta K., Brzezinski B. & Bartl F.

Title:Complexes of heterocyclic aza-derivatives of phytoalexin from cotton plant-gossypol with alkali metal cations and perchlorate anion studied by ESI mass spectrometric method in the positive and negative modes

Journal:J Mass Spectrom Year:2009; Volume:44Issue:(5):Pages:838-46.

Authors:Przybylski P., Pyta K., Remlein-Starosta D., Schroeder G., Brzezinski B. & Bartl F.

Title:Antifungal activity of alkyl and heterocyclic aza-derivatives of gossypol as well as their complexes with NaClO4 against Fusarium oxysporum f. sp. lupini

Journal:Bioorg Med Chem Lett Year:2009; Volume:19Issue:(7):Pages:1996-2000.

Authors:Ritter E., Przybylski P., Brzezinski B. & Bartl F.

Title:Schiff bases in Biological Systems

Journal:Curr Org Chem Year:2009; Volume:13:Pages:241-249.

Authors:Rose A., Lorenzen S., Goede A., Gruening B. & Hildebrand P.W.

Title:RHYTHM--a server to predict the orientation of transmembrane helices in channels and membrane-coils

Journal:Nucleic Acids Res Year:2009; Volume:37Issue:(Web Server issue):Pages:W575-80.

Authors:Rother K., Hildebrand P.W., Goede A., Gruening B. & Preissner R.

Title:Voronoia: analyzing packing in protein structures

Journal:Nucleic Acids Res Year:2009; Volume:37Issue:(Database issue):Pages:D393-5.

Authors:Scheerer P., Heck M., Goede A., Park J.H., Choe H.W., Ernst O.P., Hofmann K.P. & Hildebrand P.W

Title:Structural and kinetic modeling of an activating helix switch in the rhodopsin-transducin interface

Journal:P Natl Acad Sci USA Year:2009; Volume:106Issue:(26):Pages:10660-5.

Authors:Schuette J.C., Murphy F.V., Kelley A.C., Weir J.R., Giesebrecht J., Connell S.R., Loerke J., Mielke T., Zhang W., Penczek P.A., Ramakrishnan V. & Spahn C.M.T

Title:GTPase activation of elongation factor EF-Tu by the ribosome during decoding

Journal:EMBO J Year:2009; Volume:28Issue:(6):Pages:755-65.

Authors:Seidelt B., Innis C.A., Wilson D.N., Gartmann M., Armache J.P., Villa E., Trabuco L.G., Becker T., Mielke T., Schulten K., Steitz T.A. & Beckmann R.

Title:Structural insight into nascent polypeptide chain-mediated translational stalling

Journal:Science Year:2009; Volume:326Issue:(5958):Pages:1412-5.

Authors:Sixt S.U., Adamzik M., Spyrka D., Saul B., Hakenbeck J., Wohlschlaeger J., Costabel U., Kloss A., Giesebrecht J., Dahlmann B. & Peters J.

Title:Alveolar extracellular 20S proteasome in patients with acute respiratory distress syndrome

Journal:Am J Resp Crit Care Year:2009; Volume:179Issue:(12):Pages: 1098-106.

Authors:Spahn CM, Penczek PA

Title:Exploring conformational modes of macromolecular assemblies by multiparticle cryo-EM

Journal:EM. Curr Opin Struct Biol Year:2009; Volume:19Issue:(5):Pages:623-31.

Authors:Szczepek M., Mackeldanz P., Möncke-Buchner E., Alves J., Krüger D.H. & Reuter M.

Title:Molecular analysis of restriction endonuclease EcoRII from Escherichia coli reveals precise regulation of its enzymatic activity by autoinhibition

Journal:Mol Microbiol Year:2009; Volume:72Issue:(4):Pages: 1011-21.

Authors:von Plehwe U., Berndt U., Conz C., Chiabudini M., Fitzke E., Sickmann A., Petersen A., Pfeifer D. & Rospert S.

Title:The Hsp70 homolog Ssb is essential for glucose sensing via the SNF1 kinase network

Journal:Gene Dev Year:2009; Volume:23Issue:(17):Pages:2102-15.

Authors:Yu Y., Marintchev A., Kolupaeva V.G., Unbehaun A., Veryasova T., Lai S.C., Hong P., Wagner G., Hellen C.U.T. & Pestova T.V.

Title:Position of eukaryotic translation initiation factor eIF1A on the 40S ribosomal subunit mapped by directed hydroxyl radical probing

Journal:Nucleic Acids Res Year:2009; Volume:37Issue:(15):Pages:5167-82.