Publications of the Institute of Medical Physics and Biophysics in 2008

Authors:Altenbach C., Kusnetzow A.K., Ernst O.P., Hofmann K.P. & Hubbell W.L.

Title:High-resolution distance mapping in rhodopsin reveals the pattern of helix movement due to activation

Journal:Proc Natl Acad Sci USA Year:2008; Volume:105Issue:(21):Pages:7343-44.

Authors:Berthold P., Tsunoda S.P., Ernst O.P., Mages W., Gradmann D. & Hegemann P.

Title:Channelrhodopsin-1 Initiates Phototaxis and Photophobic Responses in Chlamydomonas by Immediate Light-Induced Depolarization

Journal:Plant Cell Year:2008; Volume:20:Pages:1655-77.

Authors:Budkevich T.V., El'skaya A.V. & Nierhaus K.H.

Title:Features of 80S mammalian ribosome and its subunits

Journal:Nucleic Acids Res Year:2008; Volume:36Issue:(14):Pages:4736-44.

Authors:Chen J.Z., Sachse C., Xu C., Mielke T., Spahn C.M.T. & Grigorieff N.

Title:A dose-rate effect in single-particle electron microscopy

Journal:J Struct Biol Year:2008; Volume:161Issue:(1):Pages:92-100.

Authors:Chen Y., Herrmann R., Fishkin N., Henklein P., Nakanishi K. & Ernst O.P

Title:Synthesis and spectroscopic characterization of photo-affinity peptide ligands to study rhodopsin-G protein interaction

Journal:Photochem Photobiol Year:2008; Volume:84Issue:(4):Pages:831-8.

Authors:Connell S.R., Topf M., Qin Y., Wilson D.N., Mielke T., Fucini P., Nierhaus K.H. & Spahn C.M.T.

Title:A new tRNA intermediate revealed on the ribosome during EF4-mediated back-translocation

Journal:Nat Struct Mol Biol Year:2008; Volume:15Issue:(9):Pages:910-5.

Authors:Di Giacco V., Márquez V., Qin Y., Pech M., Triana-Alonso F.J., Wilson D.N. & Nierhaus K.H.

Title:Shine-Dalgarno interaction prevents incorporation of noncognate amino acids at the codon following the AUG

Journal:P Natl Acad Sci USA Year:2008; Volume:105Issue:(31):Pages:10715-20.

Authors:Elgeti M., Ritter E. & Bartl F.

Title:New Insights into Light-Induced Deactivation of Active Rhodopsin by SVD and Global Analysis of Time resolved FTIR- and UV/ Vis- Data

Journal:Z Phys Chem Year:2008; Volume:222:Pages:DOL: 10.1524.

Authors:Ernst O.P., Sánchez Murcia P.A., Daldrop P., Tsunoda S.P., Kateriya S. & Hegemann P.

Title:Photoactivation of channelrhodopsin

Journal:J Biol Chem Year:2008; Volume:283Issue:(3):Pages:1637-43.

Authors:Harms J.M., Wilson D.N., Schluenzen F., Connell S.R., Stachelhaus T., Zaborowska Z., Spahn C.M.T.

Title:Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin

Journal:Mol Cell Year:2008; Volume:30Issue:(1):Pages:26-38.

Authors:Hildebrand P.W., Günther S., Goede A., Forrest L., Frömmel C. & Preissner R.

Title:Hydrogen-bonding and packing features of membrane proteins: functional implications

Journal:Biophys J Year:2008; Volume:94Issue:(6):Pages:1945-53.

Authors:Huczynski A., Lowicki D., Brzezinski B. & Bartl F.

Title:Spectroscopic, mass spectrometry, and semiempirical investigations of a new 2-(2-methoxyethoxy) ethyl ester of Monensin A and its complexes with monovalent cations

Journal:J Mol Struct Year:2008; Volume:879Issue:(1-3):Pages:14-24.

Authors:Huczynski A., Lowicki D., Brzezinski B. & Bartl F.

Title:Spectroscopic, mass spectrometry and semiempirical investigation of a new 2-methoxyethyl ester of monensin A and its complexes with Li+, Na+ and K+ cations

Journal:J Mol Struct Year:2008; Volume:874:Pages:89-100.

Authors:Huczynski A., Pospieszny T., Wawrzyn R., Ratajczak-Sitarz M., Ktrusiak A., Brzezinsik B. & Bartl F.

Title:Structural ans spectroscopic studies of new o-, m- and p-nitrobenzyl esters of lasalocid acid

Journal:J Mol Struct Year:2008; Volume:877Issue:(1-3):Pages:105-14.

Authors:Huczynski A., Stefanska J., Przybylski P., Brzezinski B. & Bartl F.

Title:Synthesis and antimicrobial properties of monensin A esters

Journal:Bioorg Med Chem Lett Year:2008; Volume:18Issue:(8):Pages:2585-9.

Authors:Krauss N., Wessner H., Welfle K., Welfle H., Scholz C., Seifert M., Zubow K., Aÿ J., Hahn M., Scheerer P., Skerra A. & Höhne W.

Title:The structure of the anti-c-myc antibody 9E10 Fab fragment/epitope peptide complex reveals a novel binding mode dominated by the heavy chain hypervariable loops

Journal:Proteins Year:2008; Volume:73:Pages:552-565.

Authors:Morizumi T., Kimata N., Terakita A., Imamoto Y., Yamashita T. & Shichida Y.

Title:G protein subtype specificity of rhodopsin intermediates metarhodopsin Ib and metarhodopsin II

Journal:Photochem Photobiol Year:2008; Volume:85Issue:(1):Pages:57-62.

Authors:Niesen F.H., Koch A., Lenski U., Harttig U., Roske Y., Heinemann U. & Hofmann K.P.

Title:An approach to quality management in structural biology: biophysical selection of proteins for successful crystallization

Journal:J Struct Biol Year:2008; Volume:162Issue:(3):Pages:451-9.

Authors:Ozlem Tastan Bishop A., Stelzl U., Pech M. & Nierhaus K.H.

Title:Characterization of RNA-protein interactions by phosphorothioate footprinting and its applications to the ribosome

Journal:Methods Mol Biol Year:2008; Volume:488:Pages:129-51.

Authors:Park J.H., Scheerer P., Hofmann K.P., Choe H.W. & Ernst O.P.

Title:Crystal structure of the ligand-free G-protein-coupled receptor opsin

Journal:Nature Year:2008; Volume:454Issue:(7201):Pages:183-7.

Authors:Pech M. & Nierhaus K.H.

Title:Ribosomal peptide-bond formation

Journal:Chem Biol Year:2008; Volume:15Issue:(5):Pages:417-9.

Authors:Przybylski P., Kira J., Schroeder G., Brzezinski B. & Bartl F.

Title:Molecular structures and stability constants of gossypol and its aza-derivative complexes with silver(I) cations studied by potentiometric, ESI MS, NMR, and AM1d semiempirical methods

Journal:J Phys Chem A Year:2008; Volume:112Issue:(35):Pages:8061-9.

Authors:Zhang F., Prigge M., Beyrière F., Tsunoda S.P., Mattis J., Yizhar O., Hegemann P. & Deisseroth K.

Title:Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri

Journal:Nat Neurosci Year:2008; Volume:11Issue:(6):Pages:631-3.

Authors:Przybylski P., Schilf W., Kamienski B., Brzezinski B. & Bartl F.

Title:CP/MAS spectroscopy in the determination of the tautomeric forms of gossypol, its Schiff bases and hydrazones in the solid state

Journal:Magn Reson Chem Year:2008; Volume:46Issue:(6):Pages:534-44.

Authors:Ritter E., Elgeti M. & Bartl F.J.

Title:Activity switches of rhodopsin

Journal:Photochem Photobiol Year:2008; Volume:84Issue:(4):Pages:911-20.

Authors:Ritter E., Stehfest K., Berndt A., Hegemann P. & Bartl F.J.

Title:Monitoring light-induced structural changes of Channelrhodopsin-2 by UV-visible and Fourier transform infrared spectroscopy

Journal:J Biol Chem Year:2008; Volume:283Issue:(50):Pages:35033-41.

Authors:Scheerer P., Park J.H., Hildebrand P.W., Kim Y.J., Krauss N., Choe H.W., Hofmann K.P. & Ernst O.P.

Title:Crystal structure of opsin in its G-protein-interacting conformation

Journal:Nature Year:2008; Volume:455Issue:(7212):Pages:497-502.

Authors:Trojan P., Krauss N., Choe H.W., Giessl A., Pulvermüller A. & Wolfrum U.

Title:Centrins in retinal photoreceptor cells: regulators in the connecting cilium

Journal:Prog Retin Eye Res Volume:27Issue:(3):Pages:237-59.

Authors:Trojan P., Rausch S., Giessl A., Klemm C., Krause E., Pulvermüller A. & Wolfrum U.

Title:Light-dependent CK2-mediated phosphorylation of centrins regulates complex formation with visual G-protein

Journal:BBA-Mol Cell Res Year:2008; Volume:1783Issue:(6):Pages:1248-60.

Authors:van Stetten D., Günther M., Scheerer P., Murgida D.H., Mroginski M.A., Krauß N., Lamparter T., Zhang J., Anstrom D.M., Vierstra R.D., Forest K.T. & Hildebrandt P.

Title:Resonanz-Raman-spektroskopische Untersuchung der Chromophorheterogenität und Photokonversion in Phytochromkristallen und -lösungen

Journal:Angew Chem Year:2008; Volume:120:Pages:4831-33.

Authors:von Stetten D., Günther M., Scheerer P., Murgida D.H., Mroginski M.A., Krauss N., Lamparter T., Zhang J., Anstrom D.M., Vierstra R.D., Forest K.T. & Hildebrandt P.

Title:Chromophore heterogeneity and photoconversion in phytochrome crystals and solution studied by resonance Raman spectroscopy

Journal:Angew Chem Year:2008; Volume:47Issue:(25):Pages:4753-5.

Authors:Zhang W., Kimmel M., Spahn C.M.T. & Penczek P.A.:

Title:Heterogeneity of large macromolecular complexes revealed by 3D cryo-EM variance analysis

Journal:Structure Year:2008; Volume:16Issue:(12):Pages:1770-6.

Authors:Knierim B., Hofmann K.P., Gärtner W., Hubbell W.L. & Ernst O.P.

Title:Rhodopsin and 9-demethyl retinal analog: Effect of a partial agonist on displacement of transmembrane helix 6 in class A GPCRs

Journal:J Biol Chem Year:2007; Volume:283Issue:(23):Pages:16268.

Authors:Zhang F., Prigge M., Beyrière F., Tsunoda S.P., Mattis J., Yizhar O., Hegemann P. & Deisseroth K.

Title:Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri

Journal:Nat Neurosci Year:2008; Volume:11Issue:(6):Pages:631-3.